## Bayesian Methods for Hackers

Probabilistic Programming and Bayesian Inference

Author: Cameron Davidson-Pilon

ISBN: 0133902927

Category: Computers

Page: 256

View: 9175

Master Bayesian Inference through Practical Examples and Computation–Without Advanced Mathematical Analysis Bayesian methods of inference are deeply natural and extremely powerful. However, most discussions of Bayesian inference rely on intensely complex mathematical analyses and artificial examples, making it inaccessible to anyone without a strong mathematical background. Now, though, Cameron Davidson-Pilon introduces Bayesian inference from a computational perspective, bridging theory to practice–freeing you to get results using computing power. Bayesian Methods for Hackers illuminates Bayesian inference through probabilistic programming with the powerful PyMC language and the closely related Python tools NumPy, SciPy, and Matplotlib. Using this approach, you can reach effective solutions in small increments, without extensive mathematical intervention. Davidson-Pilon begins by introducing the concepts underlying Bayesian inference, comparing it with other techniques and guiding you through building and training your first Bayesian model. Next, he introduces PyMC through a series of detailed examples and intuitive explanations that have been refined after extensive user feedback. You’ll learn how to use the Markov Chain Monte Carlo algorithm, choose appropriate sample sizes and priors, work with loss functions, and apply Bayesian inference in domains ranging from finance to marketing. Once you’ve mastered these techniques, you’ll constantly turn to this guide for the working PyMC code you need to jumpstart future projects. Coverage includes • Learning the Bayesian “state of mind” and its practical implications • Understanding how computers perform Bayesian inference • Using the PyMC Python library to program Bayesian analyses • Building and debugging models with PyMC • Testing your model’s “goodness of fit” • Opening the “black box” of the Markov Chain Monte Carlo algorithm to see how and why it works • Leveraging the power of the “Law of Large Numbers” • Mastering key concepts, such as clustering, convergence, autocorrelation, and thinning • Using loss functions to measure an estimate’s weaknesses based on your goals and desired outcomes • Selecting appropriate priors and understanding how their influence changes with dataset size • Overcoming the “exploration versus exploitation” dilemma: deciding when “pretty good” is good enough • Using Bayesian inference to improve A/B testing • Solving data science problems when only small amounts of data are available Cameron Davidson-Pilon has worked in many areas of applied mathematics, from the evolutionary dynamics of genes and diseases to stochastic modeling of financial prices. His contributions to the open source community include lifelines, an implementation of survival analysis in Python. Educated at the University of Waterloo and at the Independent University of Moscow, he currently works with the online commerce leader Shopify.
Posted in Computers

## Bayesian Methods for Hackers

Probabilistic Programming and Bayesian Methods

Author: Cameron Davidson-Pilon

ISBN: 9780133902839

Category: Computers

Page: 320

View: 6401

Master Bayesian Inference through Practical Examples and Computation Not Advanced Mathematical Analysis Bayesian methods of inference are deeply natural and extremely powerful. However, most discussions of Bayesian inference rely on intensely complex mathematical analyses and artificial examples, making it inaccessible to anyone without a strong mathematical background. Now, though, Cameron Davidson-Pilon introduces Bayesian inference from a computational perspective, bridging theory to practice freeing you to get results using computing power. "Bayesian Methods for Hackers" illuminates Bayesian inference through probabilistic programming with the powerful PyMC language and the closely related Python tools NumPy, SciPy, and Matplotlib. Using this approach, you can reach effective solutions in small increments, without extensive mathematical intervention. Davidson-Pilon begins by introducing the concepts underlying Bayesian inference, comparing it with other techniques and guiding you through building and training your first Bayesian model. Next, he introduces PyMC through a series of detailed examples and intuitive explanations that have been refined after extensive user feedback. You ll learn how to use the Markov Chain Monte Carlo algorithm, choose appropriate sample sizes and priors, work with loss functions, and apply Bayesian inference in domains ranging from finance to marketing. Once you ve mastered these techniques, you ll constantly turn to this guide for the working PyMC code you need to jumpstart future projects. Coverage includes Learning the Bayesian state of mind and its practical implications Understanding how computers perform Bayesian inference Using the PyMC Python library to program Bayesian analyses Building and debugging models with PyMC Testing your model s goodness of fit Opening the black box of the Markov Chain Monte Carlo algorithm to see how and why it works Leveraging the power of the Law of Large Numbers Mastering key concepts, such as clustering, convergence, autocorrelation, and thinning Using loss functions to measure an estimate s weaknesses based on your goals and desired outcomes Selecting appropriate priors and understanding how their influence changes with dataset size Overcoming the exploration vs. exploitation dilemma: deciding when pretty good is good enough Using Bayesian inference to improve A/B testing Solving data science problems that rely on mountains of data"
Posted in Computers

## Bayesian Analysis with Python

Author: Osvaldo Martin

Publisher: Packt Publishing Ltd

ISBN: 1785889850

Category: Computers

Page: 282

View: 3722

Posted in Computers

## Bayesian Programming

Author: Pierre Bessiere,Emmanuel Mazer,Juan Manuel Ahuactzin,Kamel Mekhnacha

Publisher: CRC Press

ISBN: 1439880336

Page: 380

View: 9558

Probability as an Alternative to Boolean Logic While logic is the mathematical foundation of rational reasoning and the fundamental principle of computing, it is restricted to problems where information is both complete and certain. However, many real-world problems, from financial investments to email filtering, are incomplete or uncertain in nature. Probability theory and Bayesian computing together provide an alternative framework to deal with incomplete and uncertain data. Decision-Making Tools and Methods for Incomplete and Uncertain Data Emphasizing probability as an alternative to Boolean logic, Bayesian Programming covers new methods to build probabilistic programs for real-world applications. Written by the team who designed and implemented an efficient probabilistic inference engine to interpret Bayesian programs, the book offers many Python examples that are also available on a supplementary website together with an interpreter that allows readers to experiment with this new approach to programming. Principles and Modeling Only requiring a basic foundation in mathematics, the first two parts of the book present a new methodology for building subjective probabilistic models. The authors introduce the principles of Bayesian programming and discuss good practices for probabilistic modeling. Numerous simple examples highlight the application of Bayesian modeling in different fields. Formalism and Algorithms The third part synthesizes existing work on Bayesian inference algorithms since an efficient Bayesian inference engine is needed to automate the probabilistic calculus in Bayesian programs. Many bibliographic references are included for readers who would like more details on the formalism of Bayesian programming, the main probabilistic models, general purpose algorithms for Bayesian inference, and learning problems. FAQs Along with a glossary, the fourth part contains answers to frequently asked questions. The authors compare Bayesian programming and possibility theories, discuss the computational complexity of Bayesian inference, cover the irreducibility of incompleteness, and address the subjectivist versus objectivist epistemology of probability. The First Steps toward a Bayesian Computer A new modeling methodology, new inference algorithms, new programming languages, and new hardware are all needed to create a complete Bayesian computing framework. Focusing on the methodology and algorithms, this book describes the first steps toward reaching that goal. It encourages readers to explore emerging areas, such as bio-inspired computing, and develop new programming languages and hardware architectures.

## Bayesian Reasoning and Machine Learning

Author: David Barber

Publisher: Cambridge University Press

ISBN: 0521518148

Category: Computers

Page: 697

View: 8012

A practical introduction perfect for final-year undergraduate and graduate students without a solid background in linear algebra and calculus.
Posted in Computers

## Machine Learning for Hackers

Case Studies and Algorithms to Get You Started

Author: Drew Conway,John Myles White

Publisher: "O'Reilly Media, Inc."

ISBN: 1449330533

Category: Computers

Page: 324

View: 3606

If you’re an experienced programmer interested in crunching data, this book will get you started with machine learning—a toolkit of algorithms that enables computers to train themselves to automate useful tasks. Authors Drew Conway and John Myles White help you understand machine learning and statistics tools through a series of hands-on case studies, instead of a traditional math-heavy presentation. Each chapter focuses on a specific problem in machine learning, such as classification, prediction, optimization, and recommendation. Using the R programming language, you’ll learn how to analyze sample datasets and write simple machine learning algorithms. Machine Learning for Hackers is ideal for programmers from any background, including business, government, and academic research. Develop a naïve Bayesian classifier to determine if an email is spam, based only on its text Use linear regression to predict the number of page views for the top 1,000 websites Learn optimization techniques by attempting to break a simple letter cipher Compare and contrast U.S. Senators statistically, based on their voting records Build a “whom to follow” recommendation system from Twitter data
Posted in Computers

## Applied Bayesian Hierarchical Methods

Author: Peter D. Congdon

Publisher: CRC Press

ISBN: 9781584887218

Category: Mathematics

Page: 604

View: 7635

The use of Markov chain Monte Carlo (MCMC) methods for estimating hierarchical models involves complex data structures and is often described as a revolutionary development. An intermediate-level treatment of Bayesian hierarchical models and their applications, Applied Bayesian Hierarchical Methods demonstrates the advantages of a Bayesian approach to data sets involving inferences for collections of related units or variables and in methods where parameters can be treated as random collections. Emphasizing computational issues, the book provides examples of the following application settings: meta-analysis, data structured in space or time, multilevel and longitudinal data, multivariate data, nonlinear regression, and survival time data. For the worked examples, the text mainly employs the WinBUGS package, allowing readers to explore alternative likelihood assumptions, regression structures, and assumptions on prior densities. It also incorporates BayesX code, which is particularly useful in nonlinear regression. To demonstrate MCMC sampling from first principles, the author includes worked examples using the R package. Through illustrative data analysis and attention to statistical computing, this book focuses on the practical implementation of Bayesian hierarchical methods. It also discusses several issues that arise when applying Bayesian techniques in hierarchical and random effects models.
Posted in Mathematics

## Think Bayes

Author: Allen Downey

Publisher: "O'Reilly Media, Inc."

ISBN: 1491945443

Category: Computers

Page: 210

View: 9967

If you know how to program with Python and also know a little about probability, you’re ready to tackle Bayesian statistics. With this book, you'll learn how to solve statistical problems with Python code instead of mathematical notation, and use discrete probability distributions instead of continuous mathematics. Once you get the math out of the way, the Bayesian fundamentals will become clearer, and you’ll begin to apply these techniques to real-world problems. Bayesian statistical methods are becoming more common and more important, but not many resources are available to help beginners. Based on undergraduate classes taught by author Allen Downey, this book’s computational approach helps you get a solid start. Use your existing programming skills to learn and understand Bayesian statistics Work with problems involving estimation, prediction, decision analysis, evidence, and hypothesis testing Get started with simple examples, using coins, M&Ms, Dungeons & Dragons dice, paintball, and hockey Learn computational methods for solving real-world problems, such as interpreting SAT scores, simulating kidney tumors, and modeling the human microbiome.
Posted in Computers

## Applied Multivariate Analysis

Using Bayesian and Frequentist Methods of Inference, Second Edition

Author: S. James Press

Publisher: Courier Corporation

ISBN: 0486442365

Category: Mathematics

Page: 671

View: 4687

Includes practical elements of matrix theory, continuous multivariate distributions and basic multivariate statistics in the normal distribution; regression and the analysis of variance; factor analysis and latent structure analysis; canonical correlations; stable portfolio analysis; classifications and discrimination models; control in the multivariate linear model; and structuring multivariate populations. 1982 edition.
Posted in Mathematics

## Building Probabilistic Graphical Models with Python

Author: Kiran R Karkera

Publisher: Packt Publishing Ltd

ISBN: 1783289015

Category: Computers

Page: 172

View: 4556

This is a short, practical guide that allows data scientists to understand the concepts of Graphical models and enables them to try them out using small Python code snippets, without being too mathematically complicated. If you are a data scientist who knows about machine learning and want to enhance your knowledge of graphical models, such as Bayes network, in order to use them to solve real-world problems using Python libraries, this book is for you.This book is intended for those who have some Python and machine learning experience, or are exploring the machine learning field.
Posted in Computers

## Practical Probabilistic Programming

Author: Avi Pfeffer

Publisher: N.A

ISBN: 9781617292330

Category: Computers

Page: 456

View: 4236

Posted in Computers

## Doing Bayesian Data Analysis

A Tutorial Introduction with R

Author: John Kruschke

ISBN: 9780123814869

Category: Mathematics

Page: 672

View: 2068

There is an explosion of interest in Bayesian statistics, primarily because recently created computational methods have finally made Bayesian analysis tractable and accessible to a wide audience. Doing Bayesian Data Analysis, A Tutorial Introduction with R and BUGS, is for first year graduate students or advanced undergraduates and provides an accessible approach, as all mathematics is explained intuitively and with concrete examples. It assumes only algebra and ‘rusty’ calculus. Unlike other textbooks, this book begins with the basics, including essential concepts of probability and random sampling. The book gradually climbs all the way to advanced hierarchical modeling methods for realistic data. The text provides complete examples with the R programming language and BUGS software (both freeware), and begins with basic programming examples, working up gradually to complete programs for complex analyses and presentation graphics. These templates can be easily adapted for a large variety of students and their own research needs.The textbook bridges the students from their undergraduate training into modern Bayesian methods. Accessible, including the basics of essential concepts of probability and random sampling Examples with R programming language and BUGS software Comprehensive coverage of all scenarios addressed by non-bayesian textbooks- t-tests, analysis of variance (ANOVA) and comparisons in ANOVA, multiple regression, and chi-square (contingency table analysis). Coverage of experiment planning R and BUGS computer programming code on website Exercises have explicit purposes and guidelines for accomplishment
Posted in Mathematics

## Learning from Data

Concepts, Theory, and Methods

Publisher: John Wiley & Sons

ISBN: 9780470140512

Category: Computers

Page: 624

View: 2208

An interdisciplinary framework for learning methodologies—covering statistics, neural networks, and fuzzy logic, this book provides a unified treatment of the principles and methods for learning dependencies from data. It establishes a general conceptual framework in which various learning methods from statistics, neural networks, and fuzzy logic can be applied—showing that a few fundamental principles underlie most new methods being proposed today in statistics, engineering, and computer science. Complete with over one hundred illustrations, case studies, and examples making this an invaluable text.
Posted in Computers

## The Elements of Statistical Learning

Data Mining, Inference, and Prediction

Author: Trevor Hastie,Robert Tibshirani,Jerome Friedman

Publisher: Springer Science & Business Media

ISBN: 0387216065

Category: Mathematics

Page: 536

View: 5169

During the past decade there has been an explosion in computation and information technology. With it have come vast amounts of data in a variety of fields such as medicine, biology, finance, and marketing. The challenge of understanding these data has led to the development of new tools in the field of statistics, and spawned new areas such as data mining, machine learning, and bioinformatics. Many of these tools have common underpinnings but are often expressed with different terminology. This book describes the important ideas in these areas in a common conceptual framework. While the approach is statistical, the emphasis is on concepts rather than mathematics. Many examples are given, with a liberal use of color graphics. It should be a valuable resource for statisticians and anyone interested in data mining in science or industry. The book’s coverage is broad, from supervised learning (prediction) to unsupervised learning. The many topics include neural networks, support vector machines, classification trees and boosting---the first comprehensive treatment of this topic in any book. This major new edition features many topics not covered in the original, including graphical models, random forests, ensemble methods, least angle regression & path algorithms for the lasso, non-negative matrix factorization, and spectral clustering. There is also a chapter on methods for “wide” data (p bigger than n), including multiple testing and false discovery rates. Trevor Hastie, Robert Tibshirani, and Jerome Friedman are professors of statistics at Stanford University. They are prominent researchers in this area: Hastie and Tibshirani developed generalized additive models and wrote a popular book of that title. Hastie co-developed much of the statistical modeling software and environment in R/S-PLUS and invented principal curves and surfaces. Tibshirani proposed the lasso and is co-author of the very successful An Introduction to the Bootstrap. Friedman is the co-inventor of many data-mining tools including CART, MARS, projection pursuit and gradient boosting.
Posted in Mathematics

## A Student’s Guide to Bayesian Statistics

Author: Ben Lambert

Publisher: SAGE

ISBN: 1526418266

Category: Social Science

Page: 520

View: 5390

Supported by a wealth of learning features, exercises, and visual elements as well as online video tutorials and interactive simulations, this book is the first student-focused introduction to Bayesian statistics. Without sacrificing technical integrity for the sake of simplicity, the author draws upon accessible, student-friendly language to provide approachable instruction perfectly aimed at statistics and Bayesian newcomers. Through a logical structure that introduces and builds upon key concepts in a gradual way and slowly acclimatizes students to using R and Stan software, the book covers: An introduction to probability and Bayesian inference Understanding Bayes' rule Nuts and bolts of Bayesian analytic methods Computational Bayes and real-world Bayesian analysis Regression analysis and hierarchical methods This unique guide will help students develop the statistical confidence and skills to put the Bayesian formula into practice, from the basic concepts of statistical inference to complex applications of analyses.
Posted in Social Science

## Bayesian Data Analysis, Third Edition

Author: Andrew Gelman,John B. Carlin,Hal S. Stern,David B. Dunson,Aki Vehtari,Donald B. Rubin

Publisher: CRC Press

ISBN: 1439840954

Category: Mathematics

Page: 675

View: 1612

Now in its third edition, this classic book is widely considered the leading text on Bayesian methods, lauded for its accessible, practical approach to analyzing data and solving research problems. Bayesian Data Analysis, Third Edition continues to take an applied approach to analysis using up-to-date Bayesian methods. The authors—all leaders in the statistics community—introduce basic concepts from a data-analytic perspective before presenting advanced methods. Throughout the text, numerous worked examples drawn from real applications and research emphasize the use of Bayesian inference in practice. New to the Third Edition Four new chapters on nonparametric modeling Coverage of weakly informative priors and boundary-avoiding priors Updated discussion of cross-validation and predictive information criteria Improved convergence monitoring and effective sample size calculations for iterative simulation Presentations of Hamiltonian Monte Carlo, variational Bayes, and expectation propagation New and revised software code The book can be used in three different ways. For undergraduate students, it introduces Bayesian inference starting from first principles. For graduate students, the text presents effective current approaches to Bayesian modeling and computation in statistics and related fields. For researchers, it provides an assortment of Bayesian methods in applied statistics. Additional materials, including data sets used in the examples, solutions to selected exercises, and software instructions, are available on the book’s web page.
Posted in Mathematics

## Bayesian Modeling Using WinBUGS

Author: Ioannis Ntzoufras

Publisher: John Wiley & Sons

ISBN: 1118210352

Category: Mathematics

Page: 520

View: 6024

A hands-on introduction to the principles of Bayesian modeling using WinBUGS Bayesian Modeling Using WinBUGS provides an easily accessible introduction to the use of WinBUGS programming techniques in a variety of Bayesian modeling settings. The author provides an accessible treatment of the topic, offering readers a smooth introduction to the principles of Bayesian modeling with detailed guidance on the practical implementation of key principles. The book begins with a basic introduction to Bayesian inference and the WinBUGS software and goes on to cover key topics, including: Markov Chain Monte Carlo algorithms in Bayesian inference Generalized linear models Bayesian hierarchical models Predictive distribution and model checking Bayesian model and variable evaluation Computational notes and screen captures illustrate the use of both WinBUGS as well as R software to apply the discussed techniques. Exercises at the end of each chapter allow readers to test their understanding of the presented concepts and all data sets and code are available on the book's related Web site. Requiring only a working knowledge of probability theory and statistics, Bayesian Modeling Using WinBUGS serves as an excellent book for courses on Bayesian statistics at the upper-undergraduate and graduate levels. It is also a valuable reference for researchers and practitioners in the fields of statistics, actuarial science, medicine, and the social sciences who use WinBUGS in their everyday work.
Posted in Mathematics

## Bayes' Rule

A Tutorial Introduction to Bayesian Analysis

Author: James V. Stone

Publisher: Sebtel Press

ISBN: 0956372848

Category: Bayesian statistical decision theory

Page: 170

View: 3647

In this richly illustrated book, a range of accessible examples are used to show how Bayes' rule is actually a natural consequence of commonsense reasoning. The tutorial style of writing, combined with a comprehensive glossary, makes this an ideal primer for the novice who wishes to become familiar with the basic principles of Bayesian analysis.
Posted in Bayesian statistical decision theory

What You Need to Know about Data Mining and Data-Analytic Thinking

Author: Foster Provost,Tom Fawcett

Publisher: "O'Reilly Media, Inc."

ISBN: 144937428X

Category: Computers

Page: 414

View: 5422